NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167636_1033268

Scaffold Ga0167636_1033268


Overview

Basic Information
Taxon OID3300015075 Open in IMG/M
Scaffold IDGa0167636_1033268 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5C, Northern proglacial tributary margin, adjacent to top of river)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soils → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.156387Long. (o)-50.083767Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010239Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0167636_10332681F010239N/AAAFGGIGANPLGGVAEVKLHITDYQDKQMRRRLNVAPTATLPGQTYLVFTGSQGGGMIFGNEFRVREAAASRHWGMMGFDTLNRAIEGSLATARQKDEGNDYVVEVKFNPSDTVRYWINMQTFLIDKISTRYNSQVLIEEQRSDYRRADCMMLPFHVMTRLQGQPFADLTIESYDLKSAVPPATFTMSVTP*
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