Scaffold Ga0167624_1034261

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167624_1034261

Scaffold Ga0167624_1034261

Overview

Basic Information
Taxon OID	3300015083 Open in IMG/M
Scaffold ID	Ga0167624_1034261 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1C, Ice margin)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	799
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.15656	Long. (^o)	-50.018284	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078551	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167624_10342611	F078551	GGAGG	MERDTGNLRGLSVEEAATRLGLPVVAVAALAVAGFLEPSAIDRSTGHPSFAVSDVKAFQARNADNGSGFLAFEGDAMADPKELLAALDGESDDMARRAFDLFAQVFPEAGRWGRREQQRFIAQARSRFEAILAVTGSGAEVDEALVGDLQDVGADAAWSGSPLPQLLVILRISRDLVVQTAVELAEARSGRWGHTLSLLLTRILPAVDRLTDSLAQGYWAAMIGKEEDARARYQH

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