NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167632_1003910

Scaffold Ga0167632_1003910


Overview

Basic Information
Taxon OID3300015085 Open in IMG/M
Scaffold IDGa0167632_1003910 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4B, Ice margin, adjacent to proglacial lake)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2202
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.156805Long. (o)-50.082499Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051803Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0167632_10039102F051803N/AAIMRLGTILVLALLAAPAALAQDVADTIKIRTRVVFMDALVKDKRTGTPISDLKPDNFELFDDGKPRTIPYFNSEGQARKPLALILILDLRDDGAGRFLKQPEVRAAIVDELAKLPAGDEVAILAINLNSVDDKTAAIRNGKAMWLTEFTRDRAQLETALARIPALVAPAPEKNDADKHDPNSPNRESSGSVSVSSDTDNSQPAETAATKPKENDVLETETIKGKNGATITRTIKKDGSVDVKRVSSNGKVTIDLNNIYDMAGATRDATHLVEEKRPNSQAAIVWLSDGIAPVFKEDVGATEQILIRQNAIFNTLNVDMRTLYKFLLPFGQPLIGWTGLSIAGSGKQLAQQSGGETVHVSRVKDYGSGLARVIGNLNARYSLGFALSEDERDDGRMHELVLRVKAVDAKGKQKRLEVSSRRGYYMPKTETAEASVK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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