Scaffold Ga0167622_1001037

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0167622_1001037

Scaffold Ga0167622_1001037

Overview

Basic Information
Taxon OID	3300015158 Open in IMG/M
Scaffold ID	Ga0167622_1001037 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1A, Ice margin)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11711
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.15650902	Long. (^o)	-50.06398397	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103772	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167622_10010373	F103772	GGAGG	MRIVAVLFVVLIAAGCASQSANEPPEPNVVEVVSVPNHASVSLDCGAGTVVKGTTPLRVDVPKYPEVCTMEVGADDYRPLRMKFNRGLVLKEGVQLREDASHQLDQSASTLDMLLFPLQNLGDRIQNATMRKIRADYRLEVKLIPIAR*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.