NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167652_1052130

Scaffold Ga0167652_1052130


Overview

Basic Information
Taxon OID3300015164 Open in IMG/M
Scaffold IDGa0167652_1052130 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)763
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.900879Long. (o)18.43474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015389Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0167652_10521301F015389N/ANLSNLSNLRIQHPVMKKSNLVSIGLRVKTARAIAVVLGGPNDAPIVLGKFEMTLSDPKIAATAQPYHEVMELPWDESQKEVRKTARAIEAIARKSLARLIRELQSGGMTVSGVGIVGAKDKDLARFGNFHIRAHAAEGVLFRQVLDLAADANRVKRRSFSDREFDELTAPELGTGIKQKLNNLGRTLPAPWRTDEKQAATAAWLVLHGRRK*
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