Scaffold Ga0167631_1008876

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167631_1008876

Scaffold Ga0167631_1008876

Overview

Basic Information
Taxon OID	3300015168 Open in IMG/M
Scaffold ID	Ga0167631_1008876 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1484
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.156854	Long. (^o)	-50.082619	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007124	Metagenome / Metatranscriptome	357	Y
F065186	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167631_10088761	F065186	N/A	WIVFWIHLRARRHPEKPLPKYRLPIEALAVLLVGLTGHLGGFLSGVNGPG*
Ga0167631_10088762	F007124	AGG	VSESGSAFEFFTRQHKRLEIKKRRKAMRLICGVIALACVPAALAANNVPYPKENVAEFVVEKLDITTLPSAIRPKPEKSKKTFGDYRYVTRQEDDKEGVVEAPPQGSPINIRILEQKSSGIYVCVQGQSKNADGGQIQVVYLLKLKKATGLLKGGESWKEFDVCPAIGVDPPSAEETIPW

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