NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167646_1000521

Scaffold Ga0167646_1000521


Overview

Basic Information
Taxon OID3300015192 Open in IMG/M
Scaffold IDGa0167646_1000521 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2a, rock/snow interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13836
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.899243Long. (o)18.344347Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002821Metagenome / Metatranscriptome528Y
F020047Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0167646_100052112F002821N/AVVLLSACLKSTEPQPSLIQLNGSWNYTGVQTVPVRETLTGTLTISRESGTSFQGQLVLQGVNSQTQQQRLLSGPVSGSESGTDVIDFDADLEATTRRHVGQIVADTITGTWYSSSDGAMSSGTFRVERETR*
Ga0167646_100052114F020047AGGAGVSIFGRNSHGGIAGAAISLALMLFASPLAAQKTILTLAGGTITFAAPTAADYIAGFINSATGVTFTNSAQTGASRTTTISIRSISASLGGGKVIGDLQWRRSDLAIWNSITLTDAQVEQRVLVRSGLNDPWSNTIFFRMVLTWATDAPATYSATYQITLSQTVP*
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