Scaffold Ga0167658_1005865

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167658_1005865

Scaffold Ga0167658_1005865

Overview

Basic Information
Taxon OID	3300015195 Open in IMG/M
Scaffold ID	Ga0167658_1005865 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4158
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Storglaci?ren, Tarfala, Sweden
Coordinates	Lat. (^o)	67.865505	Long. (^o)	16.714941	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001465	Metagenome / Metatranscriptome	689	Y
F028204	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167658_10058653	F001465	GGAGG	MRSITRIVLWAGSSVALAGTVLAADLTAPEIKALLYGKTVYLETTAASASGKVGQGVIYWSEDGAALYKTADGSMMHGKSEIKGNTNCTEWKERPGTGCTRYDKQGDVVTIIDVKSGQVRAKILKTAPGNAEKLAP*
Ga0167658_10058655	F028204	GAGG	MTTDRAGLLAIAERIADAENRVSQLRVRIERLNNEGSDASQAQEMLRVLSRNLSNLYVQQSVMRKTVWAWHATKAG*

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