NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167627_1010788

Scaffold Ga0167627_1010788


Overview

Basic Information
Taxon OID3300015196 Open in IMG/M
Scaffold IDGa0167627_1010788 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2C, Ice surface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4029
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell Glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.163069Long. (o)-50.018284Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083559Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0167627_10107882F083559N/AMAIIPHTVREFGVEARKEGRAWEAAFNGPIQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARVGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPRQLELQHLFGGIEFGTMTDDRLLTELGEGVWVRGIAESAAGSPHVESYKNSVRLPSADSRRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECPELGGYIGLIHVVLEKNNPDFPETLDPAHPGIDEQYEGWVVWLTLDADGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRTGDALQVGYGWGDRALFQAEFEYGVVIDQLFRRSLK*
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