NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167638_1020121

Scaffold Ga0167638_1020121


Overview

Basic Information
Taxon OID3300015197 Open in IMG/M
Scaffold IDGa0167638_1020121 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1561
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.155586Long. (o)-50.08499Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051803Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0167638_10201212F051803N/ARKVSFIKHSLRLFGRCGLGAVVFLTLFIVPAASAQEAAETIRVRTRVVFMDALVKDKQTGIAISDLKPENFEVFDDGQLRAISYFTREGQARKPLAIVMILDLRDDGAGRFLKREEVRKAIVEELAKLPPGDEVAILAINLNSVDDKTAAIRNGKAMWLTEFTRDPAQFEAALARIPALVAPAPETGETDASKHDQKNPAREGSASVMVNSDADKNATKDSSETKPKDNDVLETETIKGKNGAVITRTIRKDGSVNVKRVSRDGKVAIQLDNIYDMAGATRDATHLAEEKRPNSQAAIIWLSDGIAPIFFEDRDATEQILLRQNAIFNTLTVDMRTLYKFLLPLGQPLIGWTGLSLSGSAKRLAQQSGGESVHVGRVSDYGAGLAKIIGNLTARYSLGFALGEQEKDDGRMHELAVRVKALDAKGKLRKLDVSSRRGYYMPKIDTDQAAANK*
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