Scaffold Ga0167638_1026851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167638_1026851

Scaffold Ga0167638_1026851

Overview

Basic Information
Taxon OID	3300015197 Open in IMG/M
Scaffold ID	Ga0167638_1026851 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1328
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.155586	Long. (^o)	-50.08499	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006858	Metagenome / Metatranscriptome	363	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167638_10268512	F006858	AGGAG	MPQTKSLERSFARRIIFTLCLVALALFAGGCGKGAGGNSLHVKSPAAGDKDVPVKSAYAYAVTKSFTDTSNTITTAAAYNFDAANYDLDAANFAMTLDKPLTSDDQIRVMFSLIGEQGTDGKAPLKAGTYSAKADKFLKVETVGIVSRKGGADSKVWLDRSTLTGEVKVTSASADEISGDVDVTSGDTSIKGSFTAKILKRK*

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