NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167626_1014757

Scaffold Ga0167626_1014757


Overview

Basic Information
Taxon OID3300015204 Open in IMG/M
Scaffold IDGa0167626_1014757 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2B, Ice surface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3486
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell Glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.163011Long. (o)-50.018445Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066535Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0167626_10147572F066535GGAGMFITQPQVITPPTLVDGPVLTLGTAASCIPTNSKITLPNNYWYPGRKWRMTSWGRVSSAITTPGTARFDLRIGGVIAWDSQAVLLDTVAAHTNVGWKLVLELTCRSVGSGTATTLVGSGMWISEDILGVPATAPKGVLVAILPWNTTPGVPGTGFDNTLATNTVDLFFTQTAATGSLTVHDYMIEEMN*
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