Scaffold Ga0167629_1064798

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167629_1064798

Scaffold Ga0167629_1064798

Overview

Basic Information
Taxon OID	3300015209 Open in IMG/M
Scaffold ID	Ga0167629_1064798 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3B, Proglacial river margin, by glacier terminus)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1185
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell Glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.152081	Long. (^o)	-50.048593	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078551	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167629_10647981	F078551	GGAGG	MDQRDTGSLHELSVEEAAAILGLPVAAVTGLAAAGFLEPSAIDRPSGHPFFAMTDVKAFQARNADNGSGFLAFNGDAKADPQELLAALDGESGDMARRAFDIFAQVFPEAKRWGLREQQQFITQARSRFEAILAVTGSGVEVDEALVGELEDVGVDAAWSGSPLPQLLVVLRISRDLVVQTAVGLAEARGGRWGLALSLLLTRILPAVDRLT

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