NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137418_10099126

Scaffold Ga0137418_10099126


Overview

Basic Information
Taxon OID3300015241 Open in IMG/M
Scaffold IDGa0137418_10099126 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2623
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016134Metagenome249Y
F018901Metagenome232Y
F039072Metagenome164N

Sequences

Protein IDFamilyRBSSequence
Ga0137418_100991263F018901N/AMLKTKLVALLGLALTLSSLLLGSRILGYQRAVLTLQLGGLFLVLGGFFRLFDNHPLQDALASLYDLEATTS*
Ga0137418_100991264F016134N/AMSKTTLTVELKALRDRVGEAVQFLKSKLEEKTKTKGTQLQIEGARTKEVKLLLHKFLHHHGLNHYRVLSHGGILEVTLPEVHMVRPLGPEGSPPTASQTTPYYFPQAPALVPEKKKHATPKHRHK*
Ga0137418_100991266F039072AGTAGGLTKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVKEAPRAIVAEIWPSGRVRR*
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