NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137412_10004033

Scaffold Ga0137412_10004033


Overview

Basic Information
Taxon OID3300015242 Open in IMG/M
Scaffold IDGa0137412_10004033 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11749
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031275Metagenome / Metatranscriptome183Y
F032235Metagenome / Metatranscriptome180Y
F036857Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0137412_1000403311F032235N/ALGVYTLNVTNHGNFNAVFNNVASPNFGQFVGFLYRHEGAVIDFVD*
Ga0137412_100040335F031275GGTGGMMAAFILAFSLLTLLMFFVSYCRSLTASSLHTSITEDVRDVTGIQVRAAGRDYARVVQIPELCPDRPEDRSSLQIVGAYYSFLNLLDQGFAKIFPAVRAWAEEERAGCAHFAAVALGRRIALNREMLAQQIEL*
Ga0137412_100040337F036857GGAGGMSRKLGALALALGILVGAMELKTLVTAHGKTAVIMDNGVSPVPVKLPPAN*
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