Scaffold Ga0180093

Basic Information
Taxon OID	3300015258 Open in IMG/M
Scaffold ID	Ga0180093_1000672 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5035
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5035

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9232	Long. (^o)	-106.9513	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9232

Long. (^o)

-106.9513

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y
F011880	Metagenome / Metatranscriptome	286	Y
F042943	Metagenome	157	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0180093_10006721	F042943	N/A	KGREYARRNREQTIPIIGKYTQRNREFNEIDYDSTVPVLTAEGWVSDEILKEDVAMRAELVGVAAPSDYSKFFDYSIVRKIYRELRSSGWKPTP*
Ga0180093_10006722	F004237	AGGAGG	MTTTYPIADMMIGVRNMIEAADLRRGDQVLLLADTRSDKLTLEALSAGLRFFGAEPMTLVTEPIARYGAVPQQVLEAMRASDVVIWVWPVFITFTPAHRAMGRKREESGTQLHENRMKPYHIYFEGNAGLLARDYAKFPNKVLWKLAEKVREVVAAGKVVRMEDSLGTSLTATYDGKRLYGMQFRAGDPPGRCHFPWGRCGVFNGDGEANGEVYLSCVQGVAGMLREPMRWKVKDSLITEVDGGGEIGEECKRLFKEVPESNRLIEIMFGYHPKASAEYGIADPLHWELISKMPWAGLGTPRRHPKFRHMDGSVFNARLYIDDRLVVDRHGMLDRSLLHHPEVLEAAAEFGDPYTVLAPVSHEAHGSGTLW*
Ga0180093_10006723	F011880	AGGAGG	MFRRPETKATEEKVYKQERIGEFMTTWKDFPRPGLAAWAERKKAGLMGTAKSTYYTPRFRPFDMLSLPHQSLVILENEHHRIGVESVAGVQDSFHRYVDSDMVYFQFCGNSTVETEFGIYELEPGEVLLVPGGISHRSTGRNDSLRYFCRSHEAVDYVMGEDQYTSQSSFVVKRIGGPDWTAAQNAQPPSKGQVMEKMHFWDDGPEDQTLVERDYESLVGVAGLRRGEPGSAVRKLRAFDHFTAIVGKGREDAGTQPLMESANMRIRTYNMQDEQFAFHRALRSEEVRIQFRGDALDMSEFENVEVSPGEVTIIPLGISHSVISIPPEDESFLRLNFYSKLRWRVAIDPTKHFFDSKFEIATTVHKQAEWRKKRAAAG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0180093_1000672

Overview

Ecosystem & Geography

Associated Families

Sequences