Scaffold Ga0180093_1042244

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180093_1042244

Scaffold Ga0180093_1042244

Overview

Basic Information
Taxon OID	3300015258 Open in IMG/M
Scaffold ID	Ga0180093_1042244 Open in IMG/M
Source Dataset Name	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1009
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9232	Long. (^o)	-106.9513	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055133	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180093_10422441	F055133	GGAG	MSSNFLQSMAVLEGARAALKVGAVSKGERVGFICDLRVEPDVIYAFFTAAGELGATPFLCMVDRGRGYGPPDEFVETIKTANVLYFSWEMANSLVIKALRQERGVRCVGFPHCRTAALLADDAVRFPLEVLSALYPKTWDVFRCGKDVDVHITDPKGTDFRVVLTKDNIEEKFAQDPRYSGQIVANKPGFVSHLPVGHGPNVLSPSEPHNVTSEGTI

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