NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180085_1073131

Scaffold Ga0180085_1073131


Overview

Basic Information
Taxon OID3300015259 Open in IMG/M
Scaffold IDGa0180085_1073131 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)995
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9517Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081508Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0180085_10731311F081508AGGAGGMKRLVVLVVFALVAVMVQVNCAMAETKGSDGMVTPVQGDQTIQGKGVDAPSMEQVLINPRGFDMVWSCGGHSGHSRVFFLRKDEKIIAEIRVIDIETVDINNPVNFGAESCTTFQELRDNGIIFFGCTAASWNIPLAYDPGNKKTPFKGSGGGCSKIELSTW*

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