Basic Information | |
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Taxon OID | 3300015262 Open in IMG/M |
Scaffold ID | Ga0182007_10113050 Open in IMG/M |
Source Dataset Name | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 905 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Nebraska | |||||||
Coordinates | Lat. (o) | 41.1591 | Long. (o) | -96.4086 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F070182 | Metagenome | 123 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0182007_101130502 | F070182 | AGG | MDKRVGHGPMSRDQQKPPTERGVVDLADARVRIRSRAKPTPESLMHELDEIRSLLDQGLSTEAK |
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