NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182007_10183893

Scaffold Ga0182007_10183893


Overview

Basic Information
Taxon OID3300015262 Open in IMG/M
Scaffold IDGa0182007_10183893 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1591Long. (o)-96.4086Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008102Metagenome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0182007_101838931F008102N/ALGQTVRDVFALKRAMETMVISRLNMIKSIKTRLMTGVFDPEADLRDFEDYLRNSIGRTTQNKIATMNRIAMFDATLARLYHDLQTAQARQAGAAQQLKQAKEKLDAELAKPSSEQCASCISDLKQEIASCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVRATDEAWKSLNIVKDGVFQAIENGGMPK*
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