NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182005_1160609

Scaffold Ga0182005_1160609


Overview

Basic Information
Taxon OID3300015265 Open in IMG/M
Scaffold IDGa0182005_1160609 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)659
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1613Long. (o)-96.6752Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002582Metagenome / Metatranscriptome546Y

Sequences

Protein IDFamilyRBSSequence
Ga0182005_11606091F002582N/AYHVVLYLHLLSLFVGIGAASVLVVCLFQLRKATEFADAVPFGRVAGKVGRAFPIAILGLFATGAYMTSDVWTWDSGWIVVGIVALVVLGFQGPVIAERTGHKLGQALGENGPGPLGPHAREMTRHPGLWVVEFSSIGLVLGVVWNMTNKPGTWSAIAAAVIGYGVGAGLGYVFTLSPSDEPETVSTPAS*
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