NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182101_1022563

Scaffold Ga0182101_1022563


Overview

Basic Information
Taxon OID3300015284 Open in IMG/M
Scaffold IDGa0182101_1022563 Open in IMG/M
Source Dataset NameSwitchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)815
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000392Metagenome / Metatranscriptome1188Y
F009249Metagenome / Metatranscriptome320Y

Sequences

Protein IDFamilyRBSSequence
Ga0182101_10225631F009249N/AMKTHIEYPDIFFCKHNSPYYIEMGTYILIDLS*AGGSVAPAQPTSLR*N*GIFAQT
Ga0182101_10225632F000392N/AYVLIDLL*VGGSVAPAQPTSLR*N*GIFAQTSSTCQDGPYSKDSSGAHPCRVIDRA*ELRIPYPCSLKAITHATGSKIGSSRSRWNRGTEYYPIGMKTHIEYPDVFF*KYNSPYQIEIGTYVLIDLL*VGGSVAPAQPTSLR*N*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.