Scaffold Ga0182127_1071243

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182127_1071243

Scaffold Ga0182127_1071243

Overview

Basic Information
Taxon OID	3300015321 Open in IMG/M
Scaffold ID	Ga0182127_1071243 Open in IMG/M
Source Dataset Name	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_31MAY2016_LD1 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	602
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003453	Metagenome	485	Y
F026903	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182127_10712431	F026903	N/A	YMLSEDSAFISGMRGSIMELPELLILQLIMGQHNMTIGQPNLPLLKQKIEELV*
Ga0182127_10712432	F003453	N/A	LVDDQLDALAVQGMLTTWREKLLGQEFDNLGQLAQRVVALNICS*

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