Scaffold Ga0182109_1169339

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182109_1169339

Scaffold Ga0182109_1169339

Overview

Basic Information
Taxon OID	3300015342 Open in IMG/M
Scaffold ID	Ga0182109_1169339 Open in IMG/M
Source Dataset Name	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_09MAY2016_LD1 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	559
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	42.39	Long. (^o)	-85.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003263	Metagenome	496	Y
F039923	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182109_11693391	F039923	N/A	VIMMICILSMDRPAVGLRLPKLPILIAAFWAVVSGRQLQTFIPAMSKERTIPM*
Ga0182109_11693392	F003263	N/A	QQGRLKFDTPRKMKVDDNPFPGDQNMVDVGMFKEKTKVLTSTKSRETGTVNPKMQISANEYREIRRGRAKQKS*

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