NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182167_1055774

Scaffold Ga0182167_1055774


Overview

Basic Information
Taxon OID3300015354 Open in IMG/M
Scaffold IDGa0182167_1055774 Open in IMG/M
Source Dataset NameSwitchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1370
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000199Metagenome / Metatranscriptome1639Y
F062364Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0182167_10557741F000199GGAMELGAKRSELVQKFVPRSRVGVYHDERTRSTPLDPKLMFWCVLYHLGAFGTVWLPYETRCKTG
Ga0182167_10557742F062364N/AMNPLDALHWCLNSCLGAFRTVWVFLRPFGCLTKLGAKRSEQVQKFVPRSRVEIFWNESTRSTPWDPKLMFCCISYHLDPFGTAWLPYETLGKTDRTSAKVRTTKSSLIFFPTNAPNPPHWSLNSCFSAFHTILVHLRPFGCLAKLGAKRSELVQKFVPQSRVGILRNERTRSASLDTKLLFCCVLYHLGAFGTVKLPYETRGKMFRTSAKVRATKSRRYFLQRIHSIHPILP*
Ga0182167_10557743F000199N/AGLLSCLMELGAKHSELVQKFVPRSRFEILRNERTRSTPMDPKLLFCCVLYHLGAFGTVKLPDKTRGKMFRTSAKVHATNRVGFFLRRTHPIHPIVL*
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