Scaffold Ga0134073_10032137

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134073_10032137

Scaffold Ga0134073_10032137

Overview

Basic Information
Taxon OID	3300015356 Open in IMG/M
Scaffold ID	Ga0134073_10032137 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1326
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)		Depth (m)	.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077869	Metagenome	117	N
F088657	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134073_100321371	F088657	N/A	TPACARRQAKKQRQQCAASETGSVLQYEDLVLYPGGETLLGTQYFKGRVDAYRLKPEPRLAGAPRVRLPKQPTRISAANPVMTPVRLTATDKAVYVAGGELDRVVAFRLRSDGVPTDATPFSRTDEQTDSFPNDVAVAMLSAACE*
Ga0134073_100321372	F077869	N/A	MARRPPAVLNRLPILLGRYGMSWGELERRTLLPPRLLARLRVPGANPRLAVAERIAAALGVPVEAVWVRRRP*

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