NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134089_10008751

Scaffold Ga0134089_10008751


Overview

Basic Information
Taxon OID3300015358 Open in IMG/M
Scaffold IDGa0134089_10008751 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3200
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011834Metagenome286Y
F104892Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0134089_100087512F011834GGTGGMVVEADFYRVRLRFKRLFADPAIFEDQKNAVRRFLSYPSPSNDQVAIYQITDNIAPIDNVGKSPDVAGTARYVHRGRVVRSEYLENAKVTLEYADFGSGLSPYDHQRLWNRQRWGRMDFNIEEFHHERLKIEIPDIPELYEMLRARADPTTLVDVELPDLLDNFFRSAVGYLETRLKQLAEREHQTIDVYVARDLLPEEKQALEKRLTRPSTQSTIYILLSKTAGSAAL*
Ga0134089_100087515F104892N/AMATETYRHAMTTAFKNWHSLAVGAVLLAFSVFLTSTAFASLKTAQTALQGWAMLVIAGYAFVSAIFLGASPLSENSTLTESFPGVFDHFKSFIVGGLFYAIGNFLVTVEATTLGAPEQVLTLAVALIVGGALTLVAVLVAVAAAFVRPRK*
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