NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134089_10238236

Scaffold Ga0134089_10238236


Overview

Basic Information
Taxon OID3300015358 Open in IMG/M
Scaffold IDGa0134089_10238236 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)741
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006605Metagenome / Metatranscriptome369Y

Sequences

Protein IDFamilyRBSSequence
Ga0134089_102382361F006605N/AMRRLVWITVLAFALAVPAVGLALSGDNDGTLSVKAGVGSVYLNFNGSAVGRLQRGSIKVTDLVAGDGVGFDFSNCDVERDRSDTTLNRNDTIKVCRGSNLRFRAIGGKYQVVIKGSGIYLSAVGHGFAGLNGAGEDPSIDSDGTYSLNDGPFKSLPDFGGTVNLVAPVG
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