Scaffold Ga0163144_10176888

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163144_10176888

Scaffold Ga0163144_10176888

Overview

Basic Information
Taxon OID	3300015360 Open in IMG/M
Scaffold ID	Ga0163144_10176888 Open in IMG/M
Source Dataset Name	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3049
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Lake Vanda, McMurdo Dry Valleys
Coordinates	Lat. (^o)	-77.5281	Long. (^o)	161.59	Alt. (m)		Depth (m)	19
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027031	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163144_101768883	F027031	GGCGG	MTQRWRTLVLFYPVLDARFGSGLTRRRARRVMGREERAAIEAVVERLPAVIADWSEAAANLDPLDIVTVRRPIAGLSSSGGGRWWVGPREVRRELEEVAATGARYDSVFALWPGDPDVPQCGWGCTLGASDATFGAGFSSISTDHWRSLADDPDPAQGYVHEWLHQVEAVYRGLGVSEAELPSLHEAGAFTSARPADEPPFGHSYADYHDGVGGLSVPARTWSPWYRDWMTGRLRPAELDGGDGIEPQGLAAPPDAEIGLTPERWARRR*

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