NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163144_11742850

Scaffold Ga0163144_11742850


Overview

Basic Information
Taxon OID3300015360 Open in IMG/M
Scaffold IDGa0163144_11742850 Open in IMG/M
Source Dataset NameFreshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Lake Vanda, McMurdo Dry Valleys
CoordinatesLat. (o)-77.5281Long. (o)161.59Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011987Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0163144_117428501F011987N/AMSGTSGTASAAATLTPAEDKAADKARLLTVLVNVCGMPCSHWKTHPIVLALKRDGITQFNMDFIHLTAADIDGLKYEKGGDLVSLELNFKMMLRALLAFYHHESHKQRGGINILDPTLPMQFKVFRNSECDPTKEITPWGLAISHNKGLSDWNKLIRPSARDFKPFREAN
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