NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132258_10069098

Scaffold Ga0132258_10069098


Overview

Basic Information
Taxon OID3300015371 Open in IMG/M
Scaffold IDGa0132258_10069098 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 and col0 rhizosphere and soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8184
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006663Metagenome / Metatranscriptome367Y
F023890Metagenome / Metatranscriptome208Y
F064220Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0132258_1006909811F064220GGAGGMLRLRNLLIALAMLSPAVVSAQTGGDPRENSFQFIVDGAQVQGVIGYRIEFNHDPQVKTDSRQLNTAYSPDQRRLAVSVTQKGLNRLMGWLNDATANDNPVSKNVSIVARDNQQVILARWELTNVQPATFSSAGTGSLTEVTATVEFSYSTLTLTQAKPD*
Ga0132258_100690982F023890GGAGMRLVWSQPGRRSDDRPRTLLLVSVLCLFLGGVVVGAGGRDLRDAPRPVRAAIASLLSTGGVLFLLGVVLLAVRKSRGPDRARLTLADSESSAVAEAQRHFGQEERR*
Ga0132258_100690988F006663N/AMRPVLPVLVLLAPLALSGQEKPPTAWPGSLRNGLPAQIPGWEAAPRDPLPDTDENEMGVFTQVSRFYQRIEGPTVTRQFQLVVQDYGKDKVLEPEIRKAVAESAKVSSVDTKETSVAGYKAFAVTDRSGPNPTTLVTVVVLPSRLVLAQGANVDRDGALKLLSYVDFAQVAAAR*
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