NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132258_11531423

Scaffold Ga0132258_11531423


Overview

Basic Information
Taxon OID3300015371 Open in IMG/M
Scaffold IDGa0132258_11531423 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 and col0 rhizosphere and soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1684
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023190Metagenome / Metatranscriptome211Y
F026955Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0132258_115314231F023190GGAGLFAASASAEYGPGAVYQVEISANAQPGPSFWFWAELDPGGTSGDYQMTDCIHVGRGGPNAAAHASGEVQSWSVSGGWLTMTGISIVGGANTATVQVALPSPGPYGHSNYVKVTVTGAVPGAPLPVGAVFIFSGRGTQAQLAP*
Ga0132258_115314232F026955N/AVPSVVADFVRLAEIPGGSVQGIEEFLRTQEADPTNTLAVLERPDHPVALLKVTHAGEATLFSVPLGQERVREMYIGRVYDAVITQVHAIENAADASSVKPERVEIEGSRLAGTIDLTSYTAEERSSLMDALRKTVAAR*
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