NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132256_100062063

Scaffold Ga0132256_100062063


Overview

Basic Information
Taxon OID3300015372 Open in IMG/M
Scaffold IDGa0132256_100062063 Open in IMG/M
Source Dataset NameSoil combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3512
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUSA: Bethesda, Maryland
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025780Metagenome200Y
F039330Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0132256_1000620633F025780GGAMNSTGSKAIILSVGFLLLFGVFGRSVAQEPLLFDLKRVADRPPPDVEKILGKPSKFVDDIFRSSRGSTYPATRAAYMNGAIEVVYLEGGARYLTIWIQKLSGRYQDYSYPKDGWKLLGDLGLDRNTTADLSNQAVTRWRDLPGIYEINVFPTSEKQIWYVHVLINRIYQ*
Ga0132256_1000620634F039330AGGAGGMEKSFAPFSIVISLIVYLSTPAIAGIVVTPSPQDVSLKKLIPLSTWNKQFKITEGKDRGKVVPLTGQWNLVFGDYAGILLRNDGSGGLTMERLDLFKSHSYVVYEPALPIFTADITPGGALRRQASFKMFDVETGRLKRAGRVTHWVKQVSSSRFDTPAGLIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTASAALTQITDTVSPLR*
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