NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132256_100546791

Scaffold Ga0132256_100546791


Overview

Basic Information
Taxon OID3300015372 Open in IMG/M
Scaffold IDGa0132256_100546791 Open in IMG/M
Source Dataset NameSoil combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1270
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUSA: Bethesda, Maryland
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001218Metagenome / Metatranscriptome745Y

Sequences

Protein IDFamilyRBSSequence
Ga0132256_1005467911F001218N/AFPAVLVAFVIGPAFTKSVTAGEVTFVSPCECQGQKDGTRWPVKTDPSPVPSDKSTIQSVTPSQIYQWKGPGPDVPLTPKTDTRIAAEQKWYNLTGRLDSVKVEDDGDITLVLKDAEGKKTGSVGAEIPVGSTWCELRQTVFAWTTQSFPFSFKESQRLEMRETHIITVTGRAFFDVDHAPADHSNRRTTPKKYAVWEIHPVMALHVDQ*
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