Basic Information | |
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Taxon OID | 3300015374 Open in IMG/M |
Scaffold ID | Ga0132255_104098633 Open in IMG/M |
Source Dataset Name | Col-0 rhizosphere combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 618 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina |
Source Dataset Sampling Location | ||||||||
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Location Name | University of North Carolina | |||||||
Coordinates | Lat. (o) | 35.9 | Long. (o) | -79.05 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F092686 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0132255_1040986331 | F092686 | N/A | LIYRCRHVAESKTLWLIPSVQAGVWRAVTATLDMVNNPKLSAVFVHPMYGPNGFRETELEARTFQNVLTARHEGGENPIEEKAARISSTFHTTFNIATTTQFSPEEHDRITAYSQGLSYCVGKLMFRRPELDALVQEHMPDLHNSFRANQELIIDFLRINSYMPQVIAAFNDSWEQTGKTTFRDILTAFRTADESLNRGADPPIS |
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