NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182036_10004993

Scaffold Ga0182036_10004993


Overview

Basic Information
Taxon OID3300016270 Open in IMG/M
Scaffold IDGa0182036_10004993 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6622
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055565Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0182036_100049932F055565GAGVSLARKIFKLPLRPPPDRIVAGADSWENREHRSKFGQMRLSKREWAALAAGLLFGTAAALYTYQRYGQRDFSGRGDLLDMMPADSSAILFADLTQLRSAPFLMQLYTWAPPPQPDEDYTKFLNETGFDYERDLDRLAMAFQKTDQDSTFFAVAEGRFDQQKISALARKSGTAERRGGREIFAVPESGGAKKITFVFLSENRIALTDRPNLGQILSAKKRSEDIAEWRARFERLAGSPVFAVIRQEAAAGEALSSQTPGGLGSPELSGMLDRLEWITVAGKPEADGLRVVAEGESTSEETTSRLADLLHGILSLAQAGLNDAKTRQQLNPALREAYLALLKGADVSKLDRGDTKSVRLAFEITRAFLESARRSAAGSGSAVPAKPAPADAARAKKGGHT
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