Scaffold Ga0182036_10256046

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182036_10256046

Scaffold Ga0182036_10256046

Overview

Basic Information
Taxon OID	3300016270 Open in IMG/M
Scaffold ID	Ga0182036_10256046 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1312
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037547	Metagenome	167	Y
F052963	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182036_102560461	F037547	N/A	VRTREQLGKNVRMFGPEDTVMVKRKADWTPSMEQRADLEGRQVKCLIASEGHLWMQDYFDRFPSVVRRRLAESAFNICPACMDKEAHAAARQRKETKPSVGTYFRVIEAIERKLKQ
Ga0182036_102560463	F052963	AGGAGG	MAQIKTVEVEKVETPEENSVPIAKPGEFDLNKFKAKQTATVANVETLQSPLPVHNMAAAKDFVRLHPDEQNYWSDELCFMDVPIKGQKRNTLHLITEDLALQFLEAGEIRRFRLALASKPNDVFFLCEVPTQNLDNSWNDTNLEACGKAMMLWTKAISRKSEGAENYKITFAKEPDAFRDPDWPKQSLGELIARAFAGRMIE

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