Scaffold Ga0182041_10053961

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0182041_10053961

Scaffold Ga0182041_10053961

Overview

Basic Information
Taxon OID	3300016294 Open in IMG/M
Scaffold ID	Ga0182041_10053961 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2738
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y
F042943	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182041_100539612	F004237	AGGAG	MSTTYQVADMMIGVRNMIEAADLRIGDQVLLLADTRSDKTTIEALTAGLRFFGANPMTLVTEPISRYGDVPQAVLDAMHASDVVVWVWPVFITFTPAHRAMGRKREESGTQLHENRMKPYHIYLEGNAGLLARDYAKFPNKVLWKLAEKVREVVSAGKVVRIEDSLGTNLTATYDGKKLYGMQFRAGDPPGRCHFPWGRCGVFNGDGQANGEVYLSCVQGVAGMLPEPMRWKVKDSIITEVDGGGEVGEECKRLFKEVPESNRLIEIMFGYHPKASAPHGIADPMHWELISKMPWAGLGTPRKHPNFRHMDGSVFDARLYIDDRLIVDKHGMLDRTLLYHPEVLEVASQFGDPYKVLPPVSHEAHGSGTAW
Ga0182041_100539613	F042943	N/A	SILGKYTQRKREFNEFDYDSTLPVLTAEGWVGNEILKEDVAMRAELVGVSPPADYAKFFDYSIVKKIYGDLKNSGWKPVP

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.