NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182041_11376214

Scaffold Ga0182041_11376214


Overview

Basic Information
Taxon OID3300016294 Open in IMG/M
Scaffold IDGa0182041_11376214 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039233Metagenome / Metatranscriptome164Y
F075224Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0182041_113762141F039233N/AMTTEDVLKALARYAREANENDGRMAAKLGIKRKTLRAWLDGTDPPERFTVARLAGFLRRVGYL
Ga0182041_113762142F075224N/AMPGMRSAVSLQRRFPRTLPDGGAELSPSGGARSGSGRIKGKKTSDTIQITARVKRKTAGKLRAAAKRQLQKERRLRPRLKRPSVGKILD

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