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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300016319 Open in IMG/M |
| Scaffold ID | Ga0182033_10005519 Open in IMG/M |
| Source Dataset Name | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6760 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Puerto Rico: Rio Grande | |||||||
| Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012287 | Metagenome / Metatranscriptome | 282 | Y |
| F045228 | Metagenome / Metatranscriptome | 153 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182033_100055197 | F045228 | N/A | MAGKIDKPQSYFLRADDGEEWELWTFSEGKGPQFIRHLAAPGEVPGNAIVALPVCQTVTFPSWVTTGDREVIPEILHLQLEKRGLLAKNGSGSMMDCRVIEMRNGRALVVATVLQPDFPEELTFERASCFEPSVYTLALPQDRLAIWREKERLAVAATRGNEPLIAQILGDRELSDTAVIELKCIVLQLQLQDFCGNLLGIHLFGNFGAEEAERLQKGLGLRVTRDSVPPPSLPAVRSRLLPPEVSILHRKRRRRRQIWSGIGFLAGLYLLGIAAFVGYLYWQRQVAASLRRQIQEQEPTVAAIQKTAERWRQVEPAVNPKLYPVELLYQAASLLPPDGMRLTRFEVEKGKVIIRGEASTAPAAFKFAEDIKARPELQMFHWQMPSPTLRPDGRAEFAIEGDPKFAKTD |
| Ga0182033_100055198 | F012287 | N/A | MVGLSSQSKEIQNLRKLTKSEKRLSLLLCIATFAMANFYGLSYLIDLHSTLSREVADLRGEERTNQVWLKEKNFWLNRKQWIDRTQPRIRSNQIPQSELLESLTSTAAAGHLEIQEQSFGANSSTPNYQSVAVRLKLSGSLQDVIKWLVQIQQPELFQAVTSFSLKSANEPPTVSLELEVARWYAPNL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |