NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182033_10432400

Scaffold Ga0182033_10432400


Overview

Basic Information
Taxon OID3300016319 Open in IMG/M
Scaffold IDGa0182033_10432400 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1119
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002889Metagenome / Metatranscriptome523Y

Sequences

Protein IDFamilyRBSSequence
Ga0182033_104324001F002889GAGGMNLKPCIFCFLVLTLAALGGCSSEPPAKESKKTATALDKIQGRAQVLVESSGATDAALNAGGPSVYLRDGTNRYRLFLRTAVDVVQGTEYVAEGVYAQKAIDEIGDPDQGKNGYPLQSSCERVVRMAWSGLPFDAIDGNASLLRARVKRYPARPVFLVTRIRPVTSTDSTAVPAEPKKAAAVEKETIPEISVAADKQRALLIEGPTVQTAPLWEPTGGTVRCQVVIDPEGKISELETGVQLCETVPWSQFRYQPPVQGGRSK
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