NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182035_10008905

Scaffold Ga0182035_10008905


Overview

Basic Information
Taxon OID3300016341 Open in IMG/M
Scaffold IDGa0182035_10008905 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5780
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007182Metagenome / Metatranscriptome356Y
F020744Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0182035_100089053F020744GGAGGMRSIMRQSTVFETIAKRLLDRQGIGVIWLLHLKASASHLDGNWLAAAAFIGIADVAEQEWASGGCR
Ga0182035_100089057F007182GAGVFVDQKMAHLTKDNQALFAVLTSLFIGADIVNRPRETLRLSDMSDLKLTPSLLAMLERIEQHNGTLLMLSVTASGGQDGKLNKLRGAGYVVKCDHPSVTDGTWPAEALAITDAGRTALAKHRAEIAGKKGQRRSRGKKAVFRRDGERYIVFLGDDRIGFVRRADNGTWNHTDTTMARSGYAKTRQRAGQLLCRRYERMVRDGEI
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