NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182034_10185754

Scaffold Ga0182034_10185754


Overview

Basic Information
Taxon OID3300016371 Open in IMG/M
Scaffold IDGa0182034_10185754 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1595
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001861Metagenome / Metatranscriptome625Y
F009542Metagenome / Metatranscriptome316Y

Sequences

Protein IDFamilyRBSSequence
Ga0182034_101857542F009542GGAGMSTMVKRVAQALQQEMGTAPFDEATSFALARAAIAAMREPTEEMIDGWIRAPGAIKGGWQAMIDAALEGK
Ga0182034_101857544F001861N/ASLAKRVEGRMSKDKARQAVLSEYDNWAEKYPVDASMMGGFLFFRYLQTDRADLLDFRAAGSKWPIVHGWLQDRLQD

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