NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182039_10150660

Scaffold Ga0182039_10150660


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_10150660 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1801
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075388Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0182039_101506601F075388AGGGGGVEAISAGEGHIVSADDRLPAYPVGSARSPEDAAELAAVGGALVTAIVTQRWNEANRTWLQRRIGASPSRQTREEVTVRAGALLGGTLAYLLVTGATQGLRRLQDRSGQREVARSVCRILGVAATAPDGSMPEEASFIVESALISMGMGAKTRKRLLAEPRPASVSDLGACPLPEPLLSAVAVIAFTAMAEATTPHDAVRQMPALLRRMGLARPAAETKARQILDEYTSTYLVLSDLSAQLRTEAPERPFRVRLPVSTMMAVSEGINARNTNELNRQVTRQAMATLLRRGIRATVSSGIPLHPAASTVIRVVGQFLGEEVPALPAQSTTSEVPGEPRARSG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.