NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182039_10313810

Scaffold Ga0182039_10313810


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_10313810 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1304
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001908Metagenome / Metatranscriptome619Y
F083056Metagenome / Metatranscriptome113N
F097810Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0182039_103138101F001908N/ASLGDQILALATGKTQREIAAACKEARPNHIGIAIARHKRAGRIEERDGKLYATHSTRTEQHSVV
Ga0182039_103138102F097810AGGAGMIVRSGQPVTLRDIFDRFGLVSIQRRVRRYCRPYLKRRKHTFATLEVWSFLSDLAGRNEVLLYDGPERSRRFCEDCREDTAHERYDELGLGWYAQISHCRQCGRHGIRVWSLA
Ga0182039_103138103F083056AGGAGGMTDQEQGTTTVKGRASIVGVVDVQVIDDGGPKVLVRLGQINNGEPVDVAVVVMAPETANILSAKLAD
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