NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126362_10039425

Scaffold Ga0126362_10039425


Overview

Basic Information
Taxon OID3300016461 Open in IMG/M
Scaffold IDGa0126362_10039425 Open in IMG/M
Source Dataset NameContinental margin sediment microbial communities from China - ANME2c_DSS_Sorted metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1273
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment → Continental Margin Sediment Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameChina: Qiqihar, Heilongjiang
CoordinatesLat. (o)47.5233Long. (o)125.0078Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007510Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0126362_100394252F007510GGAMDGGAWWAAVHGVAKSQIGLSDFTFTFHFHALEKEMANHSSVLAWRIPGTGEPGGLLSMGSHRVGHD
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