NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181513_1087251

Scaffold Ga0181513_1087251


Overview

Basic Information
Taxon OID3300016700 Open in IMG/M
Scaffold IDGa0181513_1087251 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)529
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Uhrbacteria → Candidatus Uhrbacteria bacterium GW2011_GWE2_45_35(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021523Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0181513_10872511F021523GGAGMRQPQRTGPKKPDYPEETPGSRLAAKARKLGSKLTPDQRREHFNGGMAMIYGGEKKAALARH
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