NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181511_1334239

Scaffold Ga0181511_1334239


Overview

Basic Information
Taxon OID3300016702 Open in IMG/M
Scaffold IDGa0181511_1334239 Open in IMG/M
Source Dataset NameMetatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3704
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008565Metagenome / Metatranscriptome331Y
F040257Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0181511_13342393F040257AGGAGMRQIAIVTLLLVSVALSAPLMAKQKEFVDMKGMNHIFLGWVDMSADDYHHQGYSTREEYLAVINHANTIFQTICQSKVFSGRTMTAAKDRSDENTAGNDLYVKFSEVSYDHKYRLRLSVHFIDLKTNKEIGSIPLKTYTAHLCGLEGCMDKELEEVSRELQRELGGETH
Ga0181511_13342395F008565GGAGMKRLLVTAAFLLLCISFPSSLEARHGVKRYLTKESTVDMKNMNHIFLGWVDLGPDEWALHGYATKTDWTDIIGSLNAAFLRDLQVTYLPGRTITAAKDKGDENAAGNDLYIKFSDVRVDYDNYHLILSIHFIDPKTNAEIATIPTRPYYGNDWGLKNYLKAALDEVGTKLGVEITGEPQGKKK
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