NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182051_1030353

Scaffold Ga0182051_1030353


Overview

Basic Information
Taxon OID3300016727 Open in IMG/M
Scaffold IDGa0182051_1030353 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011510BT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)713
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082726Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0182051_10303531F082726N/AMGGSTIEYATVKEGVKYKEPINLFEVDLDIVDGRGCVTNTAGTASFTQRDIEVCQRSSHDGLCLRDLDTKYLGVMQPGGSYNETFTMVQEYSDQIVKGFQKANDQFLWTATTAGGDCVDGLSTIISGSTAGVVVPSAITGSAPSSTNIGDQIDVMLENLADDVQDREDLTVFMSIANFRKYITWLRTENNYYYDPAAVTNRGSLLEMMHPFANVKVVGVVGLNGSNRMVMGPAKHIV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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