NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182051_1311287

Scaffold Ga0182051_1311287


Overview

Basic Information
Taxon OID3300016727 Open in IMG/M
Scaffold IDGa0182051_1311287 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011510BT metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1981
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034556Metagenome / Metatranscriptome174N
F084261Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0182051_13112871F084261AGGMVIKNKLSFAVLTVLSLFGTLFLLTSNAHASDQMNHSSSSGYEHLDSGTNVLKYFSISPDNAQGEKRRLNNSIGINADNKSKFRIKSLNKIEYQYDQNQKITLKDDSVFYMFRVPLW
Ga0182051_13112873F034556AGTAGGMKEIIQGNLKPSTAVLVFLFLLIATASEAKENYSIPSKLYPQVLTMSEHMERINALDLSDKDKAEMAKYTLARCSAAALKIISIIDDNNDPIKNSAFFKARDRDYWHSIAVEAVMTARAFADEDNVKADLDKGIEVTKLFMHVYDRSMELESKTPNNSLLSNDGAVCSNLIKVEVSQS
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